samtools flags INT|STR[,...]
Convert between textual and numeric flag representation.
|paired-end (or multiple-segment) sequencing technology
|each segment properly aligned according to the aligner
|next segment in the template unmapped
|SEQ is reverse complemented
|SEQ of the next segment in the template is reverse complemented
|the first segment in the template
|the last segment in the template
|not passing quality controls
|PCR or optical duplicate
Written by Petr Danacek from the Sanger Institute.
Samtools website: <http://www.htslib.org/>
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